Evolution and diversity of invertase genes in Populus trichocarpa.
Identifieur interne : 003928 ( Main/Exploration ); précédent : 003927; suivant : 003929Evolution and diversity of invertase genes in Populus trichocarpa.
Auteurs : Philip N. Bocock [États-Unis] ; Alison M. Morse ; Christopher Dervinis ; John M. DavisSource :
- Planta [ 0032-0935 ] ; 2008.
Descripteurs français
- KwdFr :
- Arabidopsis (enzymologie), Arabidopsis (génétique), Famille multigénique (MeSH), Populus (enzymologie), Populus (génétique), RT-PCR (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Synténie (MeSH), Séquençage par oligonucléotides en batterie (MeSH), beta-Fructofuranosidase (génétique), Évolution moléculaire (MeSH).
- MESH :
English descriptors
- KwdEn :
- Arabidopsis (enzymology), Arabidopsis (genetics), Evolution, Molecular (MeSH), Gene Expression Regulation, Plant (MeSH), Multigene Family (MeSH), Oligonucleotide Array Sequence Analysis (MeSH), Populus (enzymology), Populus (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Synteny (MeSH), beta-Fructofuranosidase (genetics).
- MESH :
- chemical , genetics : beta-Fructofuranosidase.
- enzymology : Arabidopsis, Populus.
- genetics : Arabidopsis, Populus.
- Evolution, Molecular, Gene Expression Regulation, Plant, Multigene Family, Oligonucleotide Array Sequence Analysis, Reverse Transcriptase Polymerase Chain Reaction, Synteny.
Abstract
Invertase (EC 3.2.1.26) plays a key role in carbon utilization as it catalyzes the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families thought to have distinct evolutionary origins and can be distinguished by their pH optima for activity: acid invertases and neutral/alkaline invertases. The acid invertases apparently originated in eubacteria and are targeted to the cell wall and vacuole, while neutral/alkaline invertases apparently originated in cyanobacteria and function in the cytosol. The recently sequenced genome of Populus trichocharpa (Torr. and Gray) allowed us to identify the genes encoding invertase in this woody perennial. Here we describe the identification of eight acid invertase genes; three of which belong to the vacuolar targeted group (PtVIN1-3), and five of which belong to the cell wall targeted group (PtCIN1-5). Similarly, we report the identification of 16 neutral/alkaline invertase genes (PtNIN1-16). Expression analyses using whole genome microarrays and RT-PCR reveal evidence for expression of all invertase family members. An examination of the micro-syntenic regions surrounding the poplar invertase genes reveals extensive colinearity with Arabidopsis invertases. We also find evidence for expression of a novel intronless vacuolar invertase (PtVIN1), which apparently arose from a processed PtVIN2 transcript that re-inserted into the genome. To our knowledge, this is the first intronless invertase found in plants. This work increases the understanding of the role this family plays in carbon allocation and partitioning in forest trees as well as its evolutionary development.
DOI: 10.1007/s00425-007-0639-3
PubMed: 17938954
Affiliations:
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The invertase family in plants is composed of two sub-families thought to have distinct evolutionary origins and can be distinguished by their pH optima for activity: acid invertases and neutral/alkaline invertases. The acid invertases apparently originated in eubacteria and are targeted to the cell wall and vacuole, while neutral/alkaline invertases apparently originated in cyanobacteria and function in the cytosol. The recently sequenced genome of Populus trichocharpa (Torr. and Gray) allowed us to identify the genes encoding invertase in this woody perennial. Here we describe the identification of eight acid invertase genes; three of which belong to the vacuolar targeted group (PtVIN1-3), and five of which belong to the cell wall targeted group (PtCIN1-5). Similarly, we report the identification of 16 neutral/alkaline invertase genes (PtNIN1-16). Expression analyses using whole genome microarrays and RT-PCR reveal evidence for expression of all invertase family members. An examination of the micro-syntenic regions surrounding the poplar invertase genes reveals extensive colinearity with Arabidopsis invertases. We also find evidence for expression of a novel intronless vacuolar invertase (PtVIN1), which apparently arose from a processed PtVIN2 transcript that re-inserted into the genome. To our knowledge, this is the first intronless invertase found in plants. This work increases the understanding of the role this family plays in carbon allocation and partitioning in forest trees as well as its evolutionary development.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17938954</PMID><DateCompleted><Year>2008</Year><Month>07</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0032-0935</ISSN><JournalIssue CitedMedium="Print"><Volume>227</Volume><Issue>3</Issue><PubDate><Year>2008</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Planta</Title><ISOAbbreviation>Planta</ISOAbbreviation></Journal><ArticleTitle>Evolution and diversity of invertase genes in Populus trichocarpa.</ArticleTitle><Pagination><MedlinePgn>565-76</MedlinePgn></Pagination><Abstract><AbstractText>Invertase (EC 3.2.1.26) plays a key role in carbon utilization as it catalyzes the irreversible hydrolysis of sucrose into glucose and fructose. The invertase family in plants is composed of two sub-families thought to have distinct evolutionary origins and can be distinguished by their pH optima for activity: acid invertases and neutral/alkaline invertases. The acid invertases apparently originated in eubacteria and are targeted to the cell wall and vacuole, while neutral/alkaline invertases apparently originated in cyanobacteria and function in the cytosol. The recently sequenced genome of Populus trichocharpa (Torr. and Gray) allowed us to identify the genes encoding invertase in this woody perennial. Here we describe the identification of eight acid invertase genes; three of which belong to the vacuolar targeted group (PtVIN1-3), and five of which belong to the cell wall targeted group (PtCIN1-5). Similarly, we report the identification of 16 neutral/alkaline invertase genes (PtNIN1-16). Expression analyses using whole genome microarrays and RT-PCR reveal evidence for expression of all invertase family members. An examination of the micro-syntenic regions surrounding the poplar invertase genes reveals extensive colinearity with Arabidopsis invertases. We also find evidence for expression of a novel intronless vacuolar invertase (PtVIN1), which apparently arose from a processed PtVIN2 transcript that re-inserted into the genome. To our knowledge, this is the first intronless invertase found in plants. This work increases the understanding of the role this family plays in carbon allocation and partitioning in forest trees as well as its evolutionary development.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bocock</LastName><ForeName>Philip N</ForeName><Initials>PN</Initials><AffiliationInfo><Affiliation>Plant Molecular and Cellular Biology Program, University of Florida, PO Box 110690, Gainesville, FL 32611, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morse</LastName><ForeName>Alison M</ForeName><Initials>AM</Initials></Author><Author ValidYN="Y"><LastName>Dervinis</LastName><ForeName>Christopher</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Davis</LastName><ForeName>John M</ForeName><Initials>JM</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, 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2000;35(4):253-89</Citation><ArticleIdList><ArticleId IdType="pubmed">11005202</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Floride</li></region></list><tree><noCountry><name sortKey="Davis, John M" sort="Davis, John M" uniqKey="Davis J" first="John M" last="Davis">John M. Davis</name><name sortKey="Dervinis, Christopher" sort="Dervinis, Christopher" uniqKey="Dervinis C" first="Christopher" last="Dervinis">Christopher Dervinis</name><name sortKey="Morse, Alison M" sort="Morse, Alison M" uniqKey="Morse A" first="Alison M" last="Morse">Alison M. Morse</name></noCountry><country name="États-Unis"><region name="Floride"><name sortKey="Bocock, Philip N" sort="Bocock, Philip N" uniqKey="Bocock P" first="Philip N" last="Bocock">Philip N. Bocock</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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